Package index
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A_supply()A_demand() - CO2 supply and demand function (mol / m^2 s)
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.get_gtc().get_guc().get_gbc().get_gmc().get_gsc() - Conductance to CO2 (mol / m^2 / s)
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FvCB()W_carbox()W_regen()W_tpu() - Farquhar-von Caemmerer-Berry (FvCB) C3 photosynthesis model
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J() - J: Rate of electron transport (umol/m^2/s)
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analyze_sensitivity() - Running 2-parameter sensitivity analyses
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aq_response()deprecated - Non-rectangular hyperbolic model of light responses
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bake()temp_resp1()temp_resp2() - Leaf parameter temperature responses
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bake_par() - S3 class bake_par
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baked-class - S3 class baked
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get_f_parameter() - Get default functions for calculated parameters in photosynthesis
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compile_data() - Compiling outputs from lists
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compute_sensitivity() - Computing measures of sensitivity
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constants() - S3 class constants
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enviro_par() - S3 class enviro_par
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fit_PV_curve() - Fitting pressure-volume curves
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fit_aci_response() - Fitting ACi curves
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fit_aq_response()deprecated - Fitting light responses of net CO2 assimilation
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fit_aq_response2() - Fit photosynthetic light-response curves
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fit_g_mc_variableJ() - Fitting mesophyll conductance with the variable J method
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fit_gs_model() - Fitting stomatal conductance models
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fit_hydra_vuln_curve() - Fitting hydraulic vulnerability curves
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fit_many()deprecated - Fitting many functions across groups
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fit_photosynthesis() - Fit photosynthetic models with gas-exchange data
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fit_r_light_kok()fit_r_light_WalkerOrt()fit_r_light_yin()deprecated - Estimating light respiration
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fit_r_light2() - Fit models to estimate light respiration (\(R_\mathrm{d}\))
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fit_t_response() - Fitting temperature responses
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gs_mod_ballberry()gs_mod_leuning()gs_mod_opti()gs_mod_optifull() - Stomatal conductance models
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calculate_jmax()calculate_j() - Inverse non-rectangular hyperbola for J_max calculation
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leaf_par() - S3 class leaf_par
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make_leafpar()make_enviropar()make_bakepar()make_constants() - Make lists of parameters for
photosynthesis
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get_default_model()get_all_models()marshall_biscoe_1980()photoinhibition()experimental - Get default model
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parameter_names() - Get vector of parameter names
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photo_parameters - Input parameters to simulate C3 photosynthesis using
photosynthesis()
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photosynthesis()photo() - Simulate C3 photosynthesis
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ppm2pa() - Convert pressure from PPM to Pascals
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print_graphs() - Printing graphs to system
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read_li6800()deprecated - Read a LI-COR file
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read_licor()experimental - Read a LI-COR file
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required_variables() - Variables required for photosynthesis models
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simulate_error()experimental - Simulate gas exchange data with measurement error